Detailed information of SNP:
|
SNP ID:
sf0428775232(Gbrowse)
Chromosome: chr04 Position: 28775232 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 51.55% | 48.45% |
| All Indica | 783 | 16.35% | 83.65% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 52 | 98.08% | 1.92% |
| Indica I | 367 | 10.08% | 89.92% |
| Indica II | 210 | 17.14% | 82.86% |
| Indica Intermediate | 206 | 26.70% | 73.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428775232 | G->T | LOC_Os04g48590(LOC_Os04g48590.1) | Non-Synonymous SNP |