Detailed information of SNP:
|
SNP ID:
sf0428816883(Gbrowse)
Chromosome: chr04 Position: 28816883 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 74.42% | 25.58% |
| All Indica | 758 | 55.15% | 44.85% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 351 | 41.60% | 58.40% |
| Indica II | 204 | 68.63% | 31.37% |
| Indica Intermediate | 203 | 65.02% | 34.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428816883 | T->C | LOC_Os04g48650(LOC_Os04g48650.1) | INTRON |