Detailed information of SNP:
|
SNP ID:
sf0428829388(Gbrowse)
Chromosome: chr04 Position: 28829388 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 97.43% | 2.57% |
| All Indica | 782 | 96.42% | 3.58% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 95.62% | 4.38% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428829388 | T->C | LOC_Os04g48660(LOC_Os04g48660.1) | Non-Synonymous SNP |