Detailed information of SNP:
|
SNP ID:
sf0428942184(Gbrowse)
Chromosome: chr04 Position: 28942184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 91.52% | 8.48% |
| All Indica | 772 | 85.23% | 14.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 94.78% | 5.22% |
| Indica II | 206 | 61.65% | 38.35% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428942184 | G->A | INTERGENIC | None |