Detailed information of SNP:
|
SNP ID:
sf0428970940(Gbrowse)
Chromosome: chr04 Position: 28970940 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.36% | 29.64% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 32.80% | 67.20% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428970940 | A->G | INTERGENIC | None |