Detailed information of SNP:
|
SNP ID:
sf0428984795(Gbrowse)
Chromosome: chr04 Position: 28984795 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.76% | 48.24% |
| All Indica | 798 | 16.04% | 83.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 10.70% | 89.30% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428984795 | A->G | LOC_Os04g48900(LOC_Os04g48900.1) | Non-Synonymous SNP |