Detailed information of SNP:
|
SNP ID:
sf0428987668(Gbrowse)
Chromosome: chr04 Position: 28987668 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 98.06% | 1.94% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 478 | 95.61% | 4.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 94.65% | 5.35% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0428987668 | G->A | LOC_Os04g48910(LOC_Os04g48910.1) | Non-Synonymous SNP |