Detailed information of SNP:
|
SNP ID:
sf0429046192(Gbrowse)
Chromosome: chr04 Position: 29046192 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.33% | 47.67% |
| All Indica | 796 | 19.72% | 80.28% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 372 | 14.52% | 85.48% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429046192 | G->A | LOC_Os04g49040(LOC_Os04g49040.1) | INTRON |