Detailed information of SNP:
|
SNP ID:
sf0429120234(Gbrowse)
Chromosome: chr04 Position: 29120234 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1302 | 97.77% | 2.23% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 393 | 94.15% | 5.85% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 238 | 91.18% | 8.82% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429120234 | G->A | INTERGENIC | None |