Detailed information of SNP:
|
SNP ID:
sf0429130987(Gbrowse)
Chromosome: chr04 Position: 29130987 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.47% | 44.53% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429130987 | G->T | INTERGENIC | None |