Detailed information of SNP:
|
SNP ID:
sf0429134051(Gbrowse)
Chromosome: chr04 Position: 29134051 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 82.15% | 17.85% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 495 | 64.44% | 35.56% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 333 | 89.19% | 10.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429134051 | T->C | INTERGENIC | None |