Detailed information of SNP:
|
SNP ID:
sf0429148272(Gbrowse)
Chromosome: chr04 Position: 29148272 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 52.52% | 47.48% |
| All Indica | 791 | 16.31% | 83.69% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 7.80% | 92.20% |
| Indica II | 211 | 15.17% | 84.83% |
| Indica Intermediate | 208 | 32.69% | 67.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429148272 | C->T | LOC_Os04g49194(LOC_Os04g49194.1) | INTRON |