Detailed information of SNP:
|
SNP ID:
sf0429158213(Gbrowse)
Chromosome: chr04 Position: 29158213 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 55.87% | 44.13% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429158213 | T->C | INTERGENIC | None |