Detailed information of SNP:
|
SNP ID:
sf0429164268(Gbrowse)
Chromosome: chr04 Position: 29164268 |
Major allele:
G
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.39% | 12.61% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429164268 | C->G | LOC_Os04g49220(LOC_Os04g49220.1) | Non-Synonymous SNP |
| sf0429164268 | C->A | LOC_Os04g49220(LOC_Os04g49220.1) | Non-Synonymous SNP |