Detailed information of SNP:
|
SNP ID:
sf0429186381(Gbrowse)
Chromosome: chr04 Position: 29186381 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 81.68% | 18.32% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 482 | 51.66% | 48.34% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 323 | 34.37% | 65.63% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429186381 | A->C | INTERGENIC | None |