Detailed information of SNP:
|
SNP ID:
sf0429233786(Gbrowse)
Chromosome: chr04 Position: 29233786 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.75% | 42.25% |
| All Indica | 796 | 93.59% | 6.41% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429233786 | T->C | LOC_Os04g49280(LOC_Os04g49280.1) | Non-Synonymous SNP |