Detailed information of SNP:
|
SNP ID:
sf0429243327(Gbrowse)
Chromosome: chr04 Position: 29243327 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.49% | 40.51% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429243327 | T->C | LOC_Os04g49300(LOC_Os04g49300.1) | Non-Synonymous SNP |