Detailed information of SNP:
|
SNP ID:
sf0429284878(Gbrowse)
Chromosome: chr04 Position: 29284878 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 54.80% | 45.20% |
| All Indica | 790 | 92.28% | 7.72% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429284878 | G->C | LOC_Os04g49380(LOC_Os04g49380.1) | INTRON |
| sf0429284878 | G->C | LOC_Os04g49380(LOC_Os04g49380.1) | SNPs that disrupt splice sites |