Detailed information of SNP:
|
SNP ID:
sf0429373636(Gbrowse)
Chromosome: chr04 Position: 29373636 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.05% | 42.95% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429373636 | G->A | LOC_Os04g49560(LOC_Os04g49560.1) | INTRON |