Detailed information of SNP:
|
SNP ID:
sf0429423415(Gbrowse)
Chromosome: chr04 Position: 29423415 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 71.30% | 28.70% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 488 | 26.02% | 73.98% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 330 | 22.42% | 77.58% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 64 | 18.75% | 81.25% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429423415 | A->T | INTERGENIC | None |