Detailed information of SNP:



SNP ID: sf0429431068(Gbrowse)

Chromosome: chr04

Position: 29431068
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 96.62% 3.38%
All Indica799 99.62% 0.38%
All Japonica497 97.59% 2.41%
Aus67 61.19% 38.81%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0429431068 T->C INTERGENIC None