Detailed information of SNP:
|
SNP ID:
sf0429460002(Gbrowse)
Chromosome: chr04 Position: 29460002 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 81.54% | 18.46% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 473 | 52.22% | 47.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 318 | 35.53% | 64.47% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 63 | 76.19% | 23.81% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429460002 | C->T | INTERGENIC | None |