Detailed information of SNP:
|
SNP ID:
sf0429496133(Gbrowse)
Chromosome: chr04 Position: 29496133 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 54.34% | 45.66% |
| All Indica | 785 | 19.49% | 80.51% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 366 | 15.57% | 84.43% |
| Indica II | 211 | 27.49% | 72.51% |
| Indica Intermediate | 208 | 18.27% | 81.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429496133 | T->C | INTERGENIC | None |