Detailed information of SNP:
|
SNP ID:
sf0429501100(Gbrowse)
Chromosome: chr04 Position: 29501100 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 90.97% | 9.03% |
| All Indica | 786 | 84.22% | 15.78% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 85.01% | 14.99% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429501100 | C->A | LOC_Os04g49790(LOC_Os04g49790.1) | INTRON |