Detailed information of SNP:
|
SNP ID:
sf0429520605(Gbrowse)
Chromosome: chr04 Position: 29520605 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 96.96% | 3.04% |
| All Indica | 774 | 95.99% | 4.01% |
| All Japonica | 488 | 99.59% | 0.41% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 366 | 98.36% | 1.64% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429520605 | A->G | INTERGENIC | None |