Detailed information of SNP:
|
SNP ID:
sf0429553823(Gbrowse)
Chromosome: chr04 Position: 29553823 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1323 | 72.86% | 27.14% |
| All Indica | 703 | 51.49% | 48.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 307 | 38.44% | 61.56% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 193 | 37.82% | 62.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429553823 | A->C | INTERGENIC | None |