Detailed information of SNP:
|
SNP ID:
sf0429565795(Gbrowse)
Chromosome: chr04 Position: 29565795 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.72% | 37.28% |
| All Indica | 799 | 36.30% | 63.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429565795 | A->G | INTERGENIC | None |