Detailed information of SNP:
|
SNP ID:
sf0429572881(Gbrowse)
Chromosome: chr04 Position: 29572881 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.44% | 37.56% |
| All Indica | 799 | 36.05% | 63.95% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429572881 | G->A | LOC_Os04g49900(LOC_Os04g49900.1) | Synonymous |