Detailed information of SNP:
|
SNP ID:
sf0429588388(Gbrowse)
Chromosome: chr04 Position: 29588388 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 799 | 64.46% | 35.54% |
| All Japonica | 496 | 39.92% | 60.08% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 334 | 26.65% | 73.35% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429588388 | A->C | LOC_Os04g49920(LOC_Os04g49920.1) | Non-Synonymous SNP |