Detailed information of SNP:
|
SNP ID:
sf0429595728(Gbrowse)
Chromosome: chr04 Position: 29595728 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 72.68% | 27.32% |
| All Indica | 706 | 50.28% | 49.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 354 | 66.67% | 33.33% |
| Indica II | 149 | 25.50% | 74.50% |
| Indica Intermediate | 203 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429595728 | A->T | LOC_Os04g49930(LOC_Os04g49930.1) | INTRON |