Detailed information of SNP:
|
SNP ID:
sf0429612709(Gbrowse)
Chromosome: chr04 Position: 29612709 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 84.96% | 15.04% |
| All Indica | 796 | 73.87% | 26.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429612709 | C->T | INTERGENIC | None |