Detailed information of SNP:
|
SNP ID:
sf0429627479(Gbrowse)
Chromosome: chr04 Position: 29627479 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.85% | 47.15% |
| All Indica | 799 | 54.69% | 45.31% |
| All Japonica | 497 | 55.53% | 44.47% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 40.90% | 59.10% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429627479 | A->T | LOC_Os04g49980(LOC_Os04g49980.1) | UTR_3_PRIME |