Detailed information of SNP:
|
SNP ID:
sf0429654180(Gbrowse)
Chromosome: chr04 Position: 29654180 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.24% | 46.76% |
| All Indica | 799 | 54.82% | 45.18% |
| All Japonica | 497 | 56.94% | 43.06% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 41.79% | 58.21% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429654180 | G->A | INTERGENIC | None |