Detailed information of SNP:
|
SNP ID:
sf0429658254(Gbrowse)
Chromosome: chr04 Position: 29658254 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 76.91% | 23.09% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 495 | 57.58% | 42.42% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 333 | 42.64% | 57.36% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429658254 | C->T | INTERGENIC | None |