Detailed information of SNP:
|
SNP ID:
sf0429671546(Gbrowse)
Chromosome: chr04 Position: 29671546 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 58.84% | 41.16% |
| All Indica | 797 | 62.23% | 37.77% |
| All Japonica | 496 | 59.88% | 40.12% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 334 | 43.71% | 56.29% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429671546 | T->C | INTERGENIC | None |