Detailed information of SNP:
|
SNP ID:
sf0429682436(Gbrowse)
Chromosome: chr04 Position: 29682436 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.03% | 43.97% |
| All Indica | 798 | 61.40% | 38.60% |
| All Japonica | 497 | 53.32% | 46.68% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429682436 | T->C | INTERGENIC | None |