Detailed information of SNP:
|
SNP ID:
sf0429737159(Gbrowse)
Chromosome: chr04 Position: 29737159 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.52% | 40.48% |
| All Indica | 794 | 64.23% | 35.77% |
| All Japonica | 496 | 54.64% | 45.36% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 372 | 78.23% | 21.77% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 334 | 60.78% | 39.22% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429737159 | T->C | INTERGENIC | None |