Detailed information of SNP:
|
SNP ID:
sf0429748192(Gbrowse)
Chromosome: chr04 Position: 29748192 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 84.12% | 15.88% |
| All Indica | 791 | 72.57% | 27.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 82.84% | 17.16% |
| Indica II | 209 | 39.23% | 60.77% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429748192 | A->T | LOC_Os04g50172(LOC_Os04g50172.1) | Non-Synonymous SNP |