Detailed information of SNP:
|
SNP ID:
sf0429753428(Gbrowse)
Chromosome: chr04 Position: 29753428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 91.73% | 8.27% |
| All Indica | 766 | 95.17% | 4.83% |
| All Japonica | 491 | 85.34% | 14.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 198 | 93.43% | 6.57% |
| Indica Intermediate | 199 | 96.48% | 3.52% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 65 | 40.00% | 60.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429753428 | C->T | INTERGENIC | None |