Detailed information of SNP:
|
SNP ID:
sf0429760854(Gbrowse)
Chromosome: chr04 Position: 29760854 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 95.08% | 4.92% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 423 | 87.47% | 12.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 306 | 98.37% | 1.63% |
| Tropical Japonica | 87 | 50.57% | 49.43% |
| Japonica Intermediate | 30 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429760854 | C->T | LOC_Os04g50188(LOC_Os04g50188.1) | Synonymous |