Detailed information of SNP:
|
SNP ID:
sf0429765343(Gbrowse)
Chromosome: chr04 Position: 29765343 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 89.11% | 10.89% |
| All Indica | 767 | 97.52% | 2.48% |
| All Japonica | 422 | 72.27% | 27.73% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 359 | 98.61% | 1.39% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 198 | 92.93% | 7.07% |
| Temperate Japonica | 265 | 58.49% | 41.51% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429765343 | C->A | LOC_Os04g50192(LOC_Os04g50192.1) | Non-Synonymous SNP |