Detailed information of SNP:
|
SNP ID:
sf0429770980(Gbrowse)
Chromosome: chr04 Position: 29770980 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.44% | 21.56% |
| All Indica | 799 | 68.09% | 31.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429770980 | T->C | INTERGENIC | None |