Detailed information of SNP:
|
SNP ID:
sf0429781166(Gbrowse)
Chromosome: chr04 Position: 29781166 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 60.73% | 39.27% |
| All Indica | 797 | 62.99% | 37.01% |
| All Japonica | 496 | 63.71% | 36.29% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 334 | 87.72% | 12.28% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429781166 | G->A | LOC_Os04g50204(LOC_Os04g50204.1) | Non-Synonymous SNP |