Detailed information of SNP:
|
SNP ID:
sf0429782596(Gbrowse)
Chromosome: chr04 Position: 29782596 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 73.29% | 26.71% |
| All Indica | 799 | 67.96% | 32.04% |
| All Japonica | 497 | 77.67% | 22.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429782596 | C->G | LOC_Os04g50204(LOC_Os04g50204.1) | Non-Synonymous SNP |