Detailed information of SNP:
|
SNP ID:
sf0429791450(Gbrowse)
Chromosome: chr04 Position: 29791450 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 81.85% | 18.15% |
| All Indica | 796 | 68.59% | 31.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429791450 | G->A | LOC_Os04g50216(LOC_Os04g50216.1) | INTRON |