Detailed information of SNP:
|
SNP ID:
sf0429814128(Gbrowse)
Chromosome: chr04 Position: 29814128 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.28% | 32.72% |
| All Indica | 799 | 65.58% | 34.42% |
| All Japonica | 497 | 68.61% | 31.39% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429814128 | C->T | INTERGENIC | None |