Detailed information of SNP:
|
SNP ID:
sf0429815193(Gbrowse)
Chromosome: chr04 Position: 29815193 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.00% | 21.00% |
| All Indica | 799 | 69.09% | 30.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429815193 | C->T | INTERGENIC | None |