Detailed information of SNP:
|
SNP ID:
sf0429815402(Gbrowse)
Chromosome: chr04 Position: 29815402 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.79% | 25.21% |
| All Indica | 797 | 67.25% | 32.75% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 79.95% | 20.05% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429815402 | C->T | INTERGENIC | None |