Detailed information of SNP:
|
SNP ID:
sf0429836891(Gbrowse)
Chromosome: chr04 Position: 29836891 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 56.50% | 43.50% |
| All Indica | 797 | 57.34% | 42.66% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 211 | 20.38% | 79.62% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429836891 | T->C | INTERGENIC | None |