Detailed information of SNP:
|
SNP ID:
sf0429837330(Gbrowse)
Chromosome: chr04 Position: 29837330 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.63% | 43.37% |
| All Indica | 798 | 57.52% | 42.48% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 73.07% | 26.93% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429837330 | A->G | INTERGENIC | None |